PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta009797
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NF-YC
Protein Properties Length: 253aa    MW: 28835.2 Da    PI: 7.5568
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25797927PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC166.92.5e-52701732102
      NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                +  fw +q   ie++ df+nh+lPlarikki+k+dedv+misaeaPv+++kace+fi eltlr+w h+eenkrrtl+k+diaaa++rtdifdflvdivpr
  Pta009797  70 VDFFWGNQmqgIEQSVDFRNHSLPLARIKKIMKSDEDVRMISAEAPVVFAKACEMFINELTLRAWFHTEENKRRTLQKNDIAAAIARTDIFDFLVDIVPR 169
                678**99988889*************************************************************************************** PP

      NF-YC  99 delk 102
                delk
  Pta009797 170 DELK 173
                *975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.68E-3252163IPR009072Histone-fold
PfamPF008085.5E-2391154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.0E-3892169IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MPIRYDVTPY QAAQNLAPVA RGTFPQHQTS SYVQAAHAFP QSAHHNQLAY QHQLHQHQQQ  60
QLHHHQKQQV DFFWGNQMQG IEQSVDFRNH SLPLARIKKI MKSDEDVRMI SAEAPVVFAK  120
ACEMFINELT LRAWFHTEEN KRRTLQKNDI AAAIARTDIF DFLVDIVPRD ELKEDQVINL  180
GTPTASLSVG SSSSNAGGAN SFPFYYLPNQ HSAPRGVVVG KPMDPAIYMQ QPRSPVAYMH  240
NMLQRGYMHT DEX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B2e-4175169197NF-YC
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141147RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.139870.0root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346078.15e-80PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008346079.15e-80PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008356118.15e-80PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008356119.15e-80PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008372003.15e-80PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ9FMV52e-65NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA9NTJ81e-109A9NTJ8_PICSI; Putative uncharacterized protein
STRINGGLYMA08G17630.14e-75(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-63nuclear factor Y, subunit C2